Package: subgxe 0.9.1

Alexander Rix
subgxe: Combine Multiple GWAS by Using Gene-Environment Interactions
Classical methods for combining summary data from genome-wide association studies (GWAS) only use marginal genetic effects and power can be compromised in the presence of heterogeneity. 'subgxe' is a R package that implements p-value assisted subset testing for association (pASTA), a method developed by Yu et al (2019) <doi:10.1159/000496867>. pASTA generalizes association analysis based on subsets by incorporating gene-environment interactions into the testing procedure.
Authors:
subgxe_0.9.1.tar.gz
subgxe_0.9.1.zip(r-4.7)subgxe_0.9.1.zip(r-4.6)subgxe_0.9.1.zip(r-4.5)
subgxe_0.9.1.tgz(r-4.6-any)subgxe_0.9.1.tgz(r-4.5-any)
subgxe_0.9.1.tar.gz(r-4.7-any)subgxe_0.9.1.tar.gz(r-4.6-any)
subgxe_0.9.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
subgxe/json (API)
| # Install 'subgxe' in R: |
| install.packages('subgxe', repos = c('https://umich-cphds.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/umich-cphds/subgxe/issues
- studies - Synthetic data for subgxe
Last updated from:5e2173eb74. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 103 | ||
| source / vignettes | OK | 133 | ||
| linux-release-x86_64 | OK | 115 | ||
| macos-release-arm64 | OK | 134 | ||
| macos-oldrel-arm64 | OK | 124 | ||
| windows-devel | OK | 68 | ||
| windows-release | OK | 74 | ||
| windows-oldrel | OK | 80 | ||
| wasm-release | OK | 86 |
Exports:pasta
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| pasta for multi-phenotype analysis | pasta |
| Synthetic data for subgxe | studies |