Package: subgxe 0.9.1

Alexander Rix

subgxe: Combine Multiple GWAS by Using Gene-Environment Interactions

Classical methods for combining summary data from genome-wide association studies (GWAS) only use marginal genetic effects and power can be compromised in the presence of heterogeneity. 'subgxe' is a R package that implements p-value assisted subset testing for association (pASTA), a method developed by Yu et al (2019) <doi:10.1159/000496867>. pASTA generalizes association analysis based on subsets by incorporating gene-environment interactions into the testing procedure.

Authors:Youfei Yu [aut], Alexander Rix [aut, cre]

subgxe_0.9.1.tar.gz
subgxe_0.9.1.zip(r-4.5)subgxe_0.9.1.zip(r-4.4)subgxe_0.9.1.zip(r-4.3)
subgxe_0.9.1.tgz(r-4.4-any)subgxe_0.9.1.tgz(r-4.3-any)
subgxe_0.9.1.tar.gz(r-4.5-noble)subgxe_0.9.1.tar.gz(r-4.4-noble)
subgxe_0.9.1.tgz(r-4.4-emscripten)subgxe_0.9.1.tgz(r-4.3-emscripten)
subgxe.pdf |subgxe.html✨
subgxe/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/umich-cphds/subgxe/issues

On CRAN:

1 exports 0.62 score 0 dependencies 3 scripts 114 downloads

Last updated 5 years agofrom:5e2173eb74. Checks:OK: 7. Indexed: yes.

Exports:pasta

Dependencies: