Package: bama 1.3.0

Mike Kleinsasser

bama: High Dimensional Bayesian Mediation Analysis

Perform mediation analysis in the presence of high-dimensional mediators based on the potential outcome framework. Bayesian Mediation Analysis (BAMA), developed by Song et al (2019) <doi:10.1111/biom.13189> and Song et al (2020) <arxiv:2009.11409>, relies on two Bayesian sparse linear mixed models to simultaneously analyze a relatively large number of mediators for a continuous exposure and outcome assuming a small number of mediators are truly active. This sparsity assumption also allows the extension of univariate mediator analysis by casting the identification of active mediators as a variable selection problem and applying Bayesian methods with continuous shrinkage priors on the effects.

Authors:Alexander Rix [aut], Mike Kleinsasser [aut, cre], Yanyi Song [aut]

bama_1.3.0.tar.gz
bama_1.3.0.zip(r-4.5)bama_1.3.0.zip(r-4.4)bama_1.3.0.zip(r-4.3)
bama_1.3.0.tgz(r-4.5-x86_64)bama_1.3.0.tgz(r-4.5-arm64)bama_1.3.0.tgz(r-4.4-x86_64)bama_1.3.0.tgz(r-4.4-arm64)bama_1.3.0.tgz(r-4.3-x86_64)bama_1.3.0.tgz(r-4.3-arm64)
bama_1.3.0.tar.gz(r-4.5-noble)bama_1.3.0.tar.gz(r-4.4-noble)
bama_1.3.0.tgz(r-4.4-emscripten)bama_1.3.0.tgz(r-4.3-emscripten)
bama.pdf |bama.html
bama/json (API)

# Install 'bama' in R:
install.packages('bama', repos = c('https://umich-cphds.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/umich-cphds/bama/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

openblascpp

4.80 score 1 packages 42 scripts 393 downloads 2 exports 4 dependencies

Last updated 2 years agofrom:77a9b0ba0d. Checks:1 OK, 10 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-win-x86_64NOTEJan 29 2025
R-4.5-mac-x86_64NOTEJan 29 2025
R-4.5-mac-aarch64NOTEJan 29 2025
R-4.5-linux-x86_64NOTEJan 29 2025
R-4.4-win-x86_64NOTEJan 29 2025
R-4.4-mac-x86_64NOTEJan 29 2025
R-4.4-mac-aarch64NOTEJan 29 2025
R-4.3-win-x86_64NOTEJan 29 2025
R-4.3-mac-x86_64NOTEJan 29 2025
R-4.3-mac-aarch64NOTEDec 30 2024

Exports:bamafdr.bama

Dependencies:BHRcppRcppArmadilloRcppDist

Bayesian Mediation Analysis in R

Rendered frombama.Rmdusingknitr::rmarkdownon Jan 29 2025.

Last update: 2021-01-15
Started: 2019-09-18